Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs28659792 | chr3:52107966 | G/C | 8.21E-5 | 483 | 16.02 | 14.9 | 17.72 | KM Plot |
| THCA | rs28665387 | chr15:41532869 | G/T | 0.000247 | 479 | 15.17 | 15.9 | 17.7 | KM Plot |
| THCA | rs28665746 | chr7:76409544 | A/G | 2.87E-9 | 483 | 15.32 | 16.87 | 15.15 | KM Plot |
| THCA | rs28669373 | chr14:36306407 | G/C | 2.04E-6 | 485 | 16.08 | 15.57 | 12.9 | KM Plot |
| THCA | rs28670021 | chr14:36146887 | A/C | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs28672082 | chr14:36132999 | G/A | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs28674726 | chr7:76410035 | G/A | 2.87E-9 | 483 | 15.32 | 16.87 | 15.15 | KM Plot |
| THCA | rs2868760 | chr4:84100592 | G/T | 1.4E-9 | 490 | 16.67 | 13.93 | 12.48 | KM Plot |
| THCA | rs28699145 | chr8:8362023 | T/C | 1.47E-8 | 477 | 16.73 | 15.15 | 8.83 | KM Plot |
| THCA | rs28708787 | chr14:36009484 | G/A | 5.92E-6 | 483 | 15.93 | 16.07 | 8.33 | KM Plot |
| THCA | rs28715733 | chr3:53920452 | G/A | 6.0E-15 | 483 | 16.07 | 16.77 | 10.35 | KM Plot |
| THCA | rs28716195 | chr12:99012325 | A/C | 0.000131 | 468 | 14.77 | 19.93 | 41.87 | KM Plot |
| THCA | rs28729791 | chr3:100636101 | C/T | 2.69E-9 | 488 | 15.83 | 16.63 | 9.22 | KM Plot |
| THCA | rs28731424 | chr19:34412928 | A/G | 7.02E-7 | 477 | 15.78 | 16.07 | 17.38 | KM Plot |
| THCA | rs28735224 | chr15:41537539 | C/T | 0.000116 | 483 | 15.15 | 15.97 | 17.62 | KM Plot |